miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|90597558|gb|EB030999.1|EB030999 ACCACTGCAGGTATGTAAATGGAAAGTGAGTATCCGTACACACAGATGATCTCCATGAAGGAGTATGACACCAAGTTCAT
GATCTTGTTGTTTCTCCATAGCAGGAAACCCCAGAGGGCAAGAGGCACCAACCAGGCATAGGTGAAGATCGCTGTTGCAG
CAATGGTCACTTTTCGAAACTCAGGGGTGTATTTGTAGTTTGGTTTGCCTAAGTGCATCAGAAAGTTGGATATATTTCCG
CTGATGGCAATGGCAAACACAAGGGTAGTGCAAATCCAGAACGGTCCATAAAGATCAGGATTTCTTCGAAGGTGGACCTG
AACAAAGTTCTTTCCAGGCCATGGCAGCACTGATCCGATGATTCTTTCCTTCACATGATGGGTCTCGACATCAAAGAATT
TCTGGTAGTACTCAAAAGTCCAGAAAGGGGCACTTTTCTGTTGCCCAGAGAGAAGCTCTGTCTGGTCGTCATAGGGAAGT
GTGTCCTCATCATCACCACCACTGGGATTTAAACCAGCAGCTCTTTTCTGCTTCTCAGGTTTGACGTCATCATCTTCAAT
GCTAATGGTGGTTGCATCTCTGTTGGCTTCTAACAGATTACCAGCTTCTTCAAATTCCTGGAACTGAAAGGGGTCGTTTG
CTGTCGCCATTTACACGGATTCACCCTCAAACTCCAGAGGCTCGTCTGTCAGGAAAGTTTGGCAACAACTTGATCTTAGA
AAACTGTTGATCTTCTAAACTCGTGAAATCATTGCACTTCTCTCGGCTCCAGGAATTCC




Most similar to sp|Q6P6G5|YIPF1_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           PE=2 SV=1
          Length = 306

 Score =  291 bits (746), Expect = 3e-78
 Identities = 141/213 (66%), Positives = 172/213 (80%), Gaps = 2/213 (0%)
 Frame = -1

Query: 641 ANDPFQFQEFEEAGNLLEANRDATTISIEDDDVKPEKQKRAAGLNPSGGDDEDTLPYDD- 465
           A D  QF+EF +   LL AN DATTI+IED  V  + Q R  G +    +DE+ L  +D 
Sbjct: 3   AVDDLQFEEFGDGATLLAANPDATTINIEDPSVSFKHQPRPPG-SLGREEDEELLGTNDS 61

Query: 464 -QTELLSGQQKSAPFWTFEYYQKFFDVETHHVKERIIGSVLPWPGKNFVQVHLRRNPDLY 288
            +TELL+GQ+KS+PFWTFEYYQ FFDV+T+ V +RI GS+LP PGKNFV++++R NPDLY
Sbjct: 62  DETELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDLY 121

Query: 287 GPFWICTTLVFAIAISGNISNFLMHLGKPNYKYTPEFRKVTIAATAIFTYAWLVPLALWG 108
           GPFWIC TLVFAIAISGN+SNFL+HLG+  Y Y PEF+KV+IAAT I+ YAWLVPLALWG
Sbjct: 122 GPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFQKVSIAATVIYAYAWLVPLALWG 181

Query: 107 FLLWRNNKIMNLVSYSFMEIICVYGYSLSIYIP 9
           FLLWRN+K+MN+VSYSF+EI+CVYGYSL IYIP
Sbjct: 182 FLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIP 214